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Conference Paper
K. D'Mellow, Rodríguez, D., Carpenter, T., Koetsier, J., Job, D., van Hemert, J., Wardlaw, J., and Zhu, F., “RapidBrain: Developing a Portal for Brain Research Imaging”, in All Hands Meeting 2011, York , York, 2011.
A. Barker and van Hemert, J., “Scientific Workflow: A Survey and Research Directions”, in Lecture Notes in Computer Science, 2008, vol. 4967, p. 746--753.
S. Gesing, van Hemert, J., Koetsier, J., Bertsch, A., and Kohlbacher, O., “TOPP goes Rapid”, in Cluster Computing and the Grid, IEEE International Symposium on, Los Alamitos, CA, USA, 2010, p. 598--599.
C. S. Liew, Atkinson, M. P., van Hemert, J., and Han, L., “Towards Optimising Distributed Data Streaming Graphs using Parallel Streams”, in Data Intensive Distributed Computing (DIDC'10), in conjunction with the 19th International Symposium on High Performance Distributed Computing, Chicago, Illinois, 2010, pp. 725-736.
K. Smith-Miles, van Hemert, J., and Lim, X., “Understanding TSP Difficulty by Learning from Evolved Instances”, in Lecture Notes in Computer Science, 2010, vol. 6073, pp. 266-280.
J. Fernández, Han, L., Nuñez, A., Carretero, J., and van Hemert, J., “Using architectural simulation models to aid the design of data intensive application”, in The Third International Conference on Advanced Engineering Computing and Applications in Sciences (ADVCOMP 2009), Sliema, Malta, 2009, p. 163--168.
L. De~Ferrari, Aitken, S., van Hemert, J., and Goryanin, I., “WikiSim: simulating knowledge collection and curation in structured wikis.”, in Proceedings of the 2008 International Symposium on Wikis in Porto, Portugal, New York, NY, USA, 2008.
Conference Proceedings
C. Di Chio, Giacobini, M., and van Hemert, J., “European Graduate Student Workshop on Evolutionary Computation”. 2008.
M. Giacobini and van Hemert, J., “European Graduate Student Workshop on Evolutionary Computation”. Valencia, Spain, 2007.
M. Giacobini and van Hemert, J., “European Graduate Student Workshop on Evolutionary Computation”. Budapest, Hungary, 2006.
C. Di Chio, Giacobini, M., and van Hemert, J., “European Graduate Student Workshop on Evolutionary Computation”. 2008.
M. Giacobini and van Hemert, J., “European Graduate Student Workshop on Evolutionary Computation”. Valencia, Spain, 2007.
M. Giacobini and van Hemert, J., “European Graduate Student Workshop on Evolutionary Computation”. Budapest, Hungary, 2006.
C. Cotta and van Hemert, J., “Evolutionary Computation in Combinatorial Optimization, 7th European Conference”, Lecture Notes in Computer Science, vol. LNCS 4446. Springer, 2007.
J. van Hemert and Cotta, C., “Evolutionary Computation in Combinatorial Optimization, 8th European Conference”, Lecture Notes in Computer Science, vol. LNCS 4972. Springer, 2008.
J. van Hemert and Cotta, C., “Evolutionary Computation in Combinatorial Optimization, 8th European Conference”, Lecture Notes in Computer Science, vol. LNCS 4972. Springer, 2008.
G. Yaikhom, Liew, C., Han, L., van Hemert, J., Atkinson, M., and Krause, A., “Federated Enactment of Workflow Patterns”, Lecture Notes in Computer Science, vol. 6271. Springer Berlin / Heidelberg, pp. 317-328, 2010.
Journal Article
L. Han, van Hemert, J., and Baldock, R., “Automatically Identifying and Annotating Mouse Embryo Gene Expression Patterns”, Bioinformatics, vol. 27, pp. 1101–1107, 2011.
L. De Ferrari, Aitken, S., van Hemert, J., and Goryanin, I., “EnzML: multi-label prediction of enzyme classes using InterPro signatures.”, BMC Bioinformatics, vol. 13, p. 61, 2012.
L. Han, Liew, C. S., van Hemert, J., and Atkinson, M., “A Generic Parallel Processing Model for Facilitating Data Mining and Integration”, Parallel Computing, vol. 37, no. 3, pp. 157 - 171, 2011.
G. Yaikhom, Atkinson, M., van Hemert, J., Corcho, O., and Krause, A., “Validation and mismatch repair of workflows through typed data streams”, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 369, no. 1949, pp. 3285-3299, 2011.
Report
P. Brezany, Janciak, I., Woehrer, A., Aranda, C. B., Atkinson, M., and van Hemert, J., “ADMIRE D1.5 – Report defining an iteration of the model and language: PM3 and DL3”, ADMIRE project, 2009.
M. Atkinson, Roure, D. D., van Hemert, J., Jha, S., McNally, R., Mann, R., Viglas, S., and Williams, C., “Data-Intensive Research Workshop (15-19 March 2010) Report”, Data-Intensive Research Group, School of Informatics, University of Edinburgh, Edinburgh, 2010.

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