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Publications

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Journal Article
M. Atkinson, Meer, E. V., Fergusson, D., Davenhall, C., and Mehammed, H., Strategies and Policies to Support and Advance Education in e-Science, Computing Now, 2009.
D. ’ F. S. W. e-Science Group, Atkinson, M., Britton, D., Coveney, P., De Roure, D., Garnett, N., Geddes, N., Gurney, R., Haines, K., Hughes, L., Ingram, D., Jeffreys, P., Lyon, L., Osborne, I., Perrott, P., R., P., and Rusbridge, C., A Strategy for Research and Innovation in the Century of Information, Prometheus, vol. 27, pp. 27-45, 2009.
J. D. Armstrong and van Hemert, J. I., Towards a Virtual Fly Brain, Philosophical Transactions A, vol. 367, p. 2387--2397, 2009.
J. Rius, Cores, F., Solsona, F., van Hemert, J. I., Koetsier, J., and Notredame, C., A user-friendly web portal for T-Coffee on supercomputers, BMC Bioinformatics, vol. 12, 2011.
J. O’Donoghue and van Hemert, J. I., Using the DCC Lifecycle Model to Curate a Gene Expression Database: A Case Study, International Journal of Digital Curation, vol. 4, no. 3, 2009.
G. Yaikhom, Atkinson, M., van Hemert, J., Corcho, O., and Krause, A., Validation and mismatch repair of workflows through typed data streams, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 369, no. 1949, pp. 3285-3299, 2011.
M. P. Atkinson, Roure, D. D., Dunlop, A. N., Fox, G., Henderson, P., Hey, A. J. G., Paton, N. W., Newhouse, S., Parastatidis, S., Trefethen, A. E., Watson, P., and Webber, J., Web Service Grids: an evolutionary approach, Concurrency - Practice and Experience, vol. 17, pp. 377-389, 2005.
Y. Wang and Han, L., On Zero-symmetric BZ-algebras, Journal of East China University of Science and Technology, vol. 23, no. 6, p. pp 755~761, 1997.
Report
P. Brezany, Janciak, I., Woehrer, A., Aranda, C. B., Atkinson, M., and van Hemert, J., ADMIRE D1.5 – Report defining an iteration of the model and language: PM3 and DL3, ADMIRE project, 2009.
M. Atkinson, Crowcroft, J., Goble, C., Gurd, J., Rodden, T., Shadbolt, N., Sloman, M., Sommerville, I., and Storey, T., Computer Challenges to emerge from e-Science. , 2003.
M. Atkinson, Roure, D. D., van Hemert, J., Jha, S., McNally, R., Mann, R., Viglas, S., and Williams, C., Data-Intensive Research Workshop (15-19 March 2010) Report, Data-Intensive Research Group, School of Informatics, University of Edinburgh, Edinburgh, 2010.
P. Martin, Dispel Tutorial, 2012.
P. Martin, Atkinson, M., Parsons, M., Carter, A., and Francis, G., EDIM1 Progress Report, 2011.
M. Atkinson, Vander Meer, E., Fergusson, D., and Artacho, M., Education and Training Task Force Report, 2008.
A. Barker, van Hemert, J. I., Baldock, R. A., and Atkinson, M. P., An e-Infrastructure for Collaborative Research in Human Embryo Development, 2009.
M. P. Atkinson, Dialani, V., Guy, L., Narang, I., Paton, N. W., Pearson, D., Storey, T., and Watson, P., Grid Database Access and Integration: Requirements and Functionalities, 2003.
G. McGilvary and Oulevey, T., The Implementation of OpenStack Cinder and Integration with NetApp and Ceph, CERN, 2013.
N. J. Harding and Atkinson, M. P., SPLAT: (Suffix-tree Powered Local Alignment Tool): A Full-Sensitivity Protein Database Search Program that Accelerates the Smith-Waterman Algorithm using a Generalised Suffix Tree Index., University of Glasgow, 2004.
M. Atkinson, Roure, D. D., Dunlop, A., Fox, G., Henderson, P., Hey, T., Paton, N., Newhouse, S., Parastatidis, S., Trefethen, A., Watson, P., and Webber, J., Web Service Grids: An Evolutionary Approach, 2004.

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