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2010
S. Gesing, van Hemert, J., Koetsier, J., Bertsch, A., and Kohlbacher, O., TOPP goes Rapid, in Cluster Computing and the Grid, IEEE International Symposium on, Los Alamitos, CA, USA, 2010, p. 598--599.
C. S. Liew, Atkinson, M. P., van Hemert, J., and Han, L., Towards Optimising Distributed Data Streaming Graphs using Parallel Streams, in Data Intensive Distributed Computing (DIDC'10), in conjunction with the 19th International Symposium on High Performance Distributed Computing, Chicago, Illinois, 2010, pp. 725-736.
K. Smith-Miles, van Hemert, J., and Lim, X., Understanding TSP Difficulty by Learning from Evolved Instances, in Lecture Notes in Computer Science, 2010, vol. 6073, pp. 266-280.
S. Gesing, Marton, I., Birkenheuer, G., Schuller, B., Grunzke, R., Krüger, J., Breuers, S., Blunk, D., Fels, G., Packschies, L., Brinkmann, A., Kohlbacher, O., and Kozlovszky, M., Workflow Interoperability in a Grid Portal for Molecular Simulations, in Proceedings of the International Workshop on Science Gateways (IWSG10), 2010.
2011
A. O. Maghraby, Automatic Agent Protocol Generation from Argumentation, in 13th European Agent Systems Summer Schoo, 2011.
L. Han, van Hemert, J., and Baldock, R., Automatically Identifying and Annotating Mouse Embryo Gene Expression Patterns, Bioinformatics, vol. 27, pp. 1101–1107, 2011.
K. Smith-Miles and {van Hemert}, J. I., Discovering the suitability of optimisation algorithms by learning from evolved instances, Annals of Mathematics and Artificial Intelligence, vol. Online Fir, 2011.
P. Martin and Yaikhom, G., DISPEL Reference Manual, in Advanced Data Mining and Integration Research for Europe (ADMIRE), 2011.
P. Martin, Atkinson, M., Parsons, M., Carter, A., and Francis, G., EDIM1 Progress Report, 2011.
L. Vaccari, Shvaiko, P., Pane, J., Besana, P., and Marchese, M., An evaluation of ontology matching in geo-service applications, Geoinformatica, pp. 1-36, 2011.
J. van Hemert, Koetsier, J., Torterolo, L., Porro, I., Melato, M., and Barbera, R., Generating web-based user interfaces for computational science, Concurrency and Computation: Practice and Experience, vol. 23, p. 256--268, 2011.
L. Han, Liew, C. S., van Hemert, J., and Atkinson, M., A Generic Parallel Processing Model for Facilitating Data Mining and Integration, Parallel Computing, vol. 37, no. 3, pp. 157 - 171, 2011.
S. Gesing, Grunzke, R., Balaskó, Á., Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Fels, G., Herres-Pawlis, S., Kacsuk, P., Kozlovszky, M., Krüger, J., Packschies, L., Schäfer, P., Schuller, B., Schuster, J., Steinke, T., Fabri, A. Szikszay, Wewior, M., Müller-Pfefferkorn, R., and Kohlbacher, O., Granular Security for a Science Gateway in Structural Bioinformatics, in Proceedings of the International Workshop on Science Gateways for Life Sciences (IWSG-Life 2011), 2011.
S. Bijani and Robertson, D., Intrusion Detection in Open Peer-to-Peer Multi-agent Systems, 5th International Conference on Autonomous Infrastructure, Management and Security (AIMS 2011). Springer-Verlag Berlin, 2011.
D. A. Bacigalupo, van Hemert, J. I., Chen, X., Usmani, A., Chester, A. P., He, L., Dillenberger, D. N., Wills, G. B., Gilbert, L., and Jarvis, S. A., Managing dynamic enterprise and urgent workloads on clouds using layered queuing and historical performance models, Simulation Modelling Practice and Theory, vol. 19, pp. 1479–1495, 2011.
G. McGilvary, Atkinson, M., Barker, A., and Lloyd, A., Optimum Platform Selection and Configuration for Computational Jobs, in All Hands Meeting 2011, York, 2011.
F. Zhu, Rodríguez, D., Carpenter, T., Atkinson, M., and Wardlaw, J., A Parallel Deconvolution Algorithm in Perfusion Imaging, in Healthcare Informatics, Imaging, and Systems Biology (HISB), San Jose, California , 2011.
C. S. Liew, Atkinson, M. P., Ostrowski, R., Cole, M., van Hemert, J. I., and Han, L., Performance database: capturing data for optimizing distributed streaming workflows, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 369, no. 1949, pp. 3268-3284, 2011.
S. Bijani, Robertson, D., and Aspinall, D., Probing Attacks on Multi-agent Systems using Electronic Institutions, Declarative Agent Languages and Technologies Workshop (DALT), AAMAS 2011. 2011.
K. D'Mellow, Rodríguez, D., Carpenter, T., Koetsier, J., Job, D., van Hemert, J., Wardlaw, J., and Zhu, F., RapidBrain: Developing a Portal for Brain Research Imaging, in All Hands Meeting 2011, York , York, 2011.
S. Gesing, Kacsuk, P., Kozlovszky, M., Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Fels, G., Grunzke, R., Herres-Pawlis, S., Krüger, J., Packschies, L., Müller-Pfefferkorn, R., Schäfer, P., Steinke, T., Fabri, A. Szikszay, Warzecha, K., Wewior, M., and Kohlbacher, O., A Science Gateway for Molecular Simulations, in EGI User Forum 2011, 2011.
S. Gesing, van Hemert, J., Kacsuk, P., and Kohlbacher, O., Special Issue: Portals for life sciences---Providing intuitive access to bioinformatic tools, Concurrency and Computation: Practice and Experience, vol. 23, no. 23, p. 223--234, 2011.
J. Rius, Cores, F., Solsona, F., van Hemert, J. I., Koetsier, J., and Notredame, C., A user-friendly web portal for T-Coffee on supercomputers, BMC Bioinformatics, vol. 12, 2011.
G. Yaikhom, Atkinson, M., van Hemert, J., Corcho, O., and Krause, A., Validation and mismatch repair of workflows through typed data streams, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 369, no. 1949, pp. 3285-3299, 2011.

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