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powerNest

PowerNest (www.powernest.net) is a software tool enabling experimenters to explore the effect of sampling on noise propagation throughout qPCR assays

powerNest 0.5.7 released

Version: 
0.5.7

This version contains minor UI tweaks to improve rendering on Windows platforms and an installer. Also improved handling of pre-allocated data.

Can now delete selections by right-clicking a node with the mouse.

Projects: 

e-Science Research

Speaker(s): 
Presentation Type: 
invited

We explain how e-Science is essential to providing the context in terms of methods, tools and infrastructure for the development of a virtual fly brain. We show examples of steering computational processes, managing knowledge in the spatial context of an organism and formulation of models in developmental biology.

Date and time: 
Monday, 21 September, 2009 - 14:00
Location: 
Fly Brain Behaviour Workshop, Oxford, UK
Projects: 

powerNest

Version: 
0.5

PowerNest (www.powernest.net) is a software tool enabling experimenters to explore the effect of sampling on noise propagation throughout qPCR assays. The sampling process is assumed to be comprised of a number of levels; the acquisition of a sample and the preparation of extracted material, reverse-transcription of the mRNA, and the qPCR itself. Given a small set of data, representative of a larger assay, the error at each stage of the experiment is profiled using a nested-ANOVA.

Projects: 

GeneE: Manage your microarray data more effectively

Speaker(s): 
Presentation Type: 
demo

A 20-minute demonstration on the benefits of using GeneE to manage and analyse data acquired in gene expression studies.

Date and time: 
Wednesday, 10 September, 2008 - 13:50
Location: 
Appleton Tower Demo Room 2, e-Science All Hands Meeting 2008, Edinburgh, UK
Projects: 

Microarrays in Minutes: Streamlining Gene Expression Data Analyses

Speaker(s): 
Presentation Type: 
talk

The main aim of this project is to provide biologists with a compact, efficient, and uncomplicated software platform for the robust analysis, intuitive representation, and reliable preservation of all data generated by high-throughput gene expression analysis techniques; such as quantitative real-time PCR (qPCR) or microarrays.

Date and time: 
Wednesday, 10 September, 2008 - 11:00
Location: 
e-Science All Hands Meeting 2008, Edinburgh, UK
Projects: 

Wrapping Tools to Automate Workflows for Gene Therapy in Cystic Fibrosis

NeSC Research Seminar Series
Speaker: 
Rob Kitchen

Currently, the analysis of gene expression data generated by microarray and real-time PCR experiments is a slow process, often taking several weeks to properly process data from a small number of patients. In anticipation of a new clinical trial expected to involve 200 patients it is necessary to improve the efficiency of these analyses, through automation, in order to return meaningful biological data on a much shorter time scale.

Date and time: 
Wednesday, 17 October, 2007 - 11:00
Length: 
45 minutes
Location: 
Cramond
Projects: 

Wrapping Tools to Automate Workflows for Gene Expression Analyses in Cystic Fibrosis

NeSC Research Seminar Series
Speaker: 
Rob Kitchen

Currently, the analysis of gene expression data generated by microarray and real-time PCR experiments is a slow process, often taking several weeks to properly process data from a small number of patients. In anticipation of a new clinical trial expected to involve 200 patients it is necessary to improve the efficiency of these analyses, through automation, in order to return meaningful biological data on a much shorter time scale.

Date and time: 
Tuesday, 4 September, 2007 - 14:00
Length: 
60 minutes
Location: 
Newhaven
Projects: 

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